If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ), 'gf_id' => 'HOM05D000908', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000908' ), 'data_identifier' => 'HOM05D000908', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000908', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '659', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p46920' => 'bna', 'A03p46930' => 'bna', 'A06p09340' => 'bna', 'A08p32970' => 'bna', 'A09p13140' => 'bna', 'A09p16170' => 'bna', 'A09p16190' => 'bna', 'A09p64050' => 'bna', 'A09p64070' => 'bna', 'A10p28710' => 'bna', 'Aa31LG11G2090' => 'aar', 'Aa31LG1G2380' => 'aar', 'Aa31LG1G2510' => 'aar', 'Aa31LG1G2560' => 'aar', 'Aa31LG1G2570' => 'aar', 'Aa31LG1G2580' => 'aar', 'Aa31LG1G2590' => 'aar', 'Aa31LG2G200' => 'aar', 'Aa31LG2G210' => 'aar', 'Aa31LG3G18660' => 'aar', 'Aa31LG3G18670' => 'aar', 'Aa31LG7G11210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.403' => 'aag', 'Actinidia04852' => 'ach', 'Actinidia04853' => 'ach', 'Actinidia04854' => 'ach', 'Actinidia09238' => 'ach', 'Actinidia12190' => 'ach', 'Actinidia19013' => 'ach', 'Actinidia27456' => 'ach', 'Actinidia35017' => 'ach', 'Ah.01g008970' => 'amhyb', 'Ah.01g008980' => 'amhyb', 'Ah.05g173890' => 'amhyb', 'Ah.11g048100' => 'amhyb', 'Ah.12g056540' => 'amhyb', 'Ah.13g072930' => 'amhyb', 'AL1G23400' => 'aly', 'AL1G23410' => 'aly', 'AL1G23430' => 'aly', 'AL1G23470' => 'aly', 'AL2G13250' => 'aly', 'AL2G13270' => 'aly', 'AL2G13290' => 'aly', 'AL2G13300' => 'aly', 'AL2G13310' => 'aly', 'AL2G13320' => 'aly', 'AL6G18140' => 'aly', 'AL8G37950' => 'aly', 'Aqoxy3G00447' => 'aox', 'Aqoxy7G00729' => 'aox', 'Aqoxy7G00730' => 'aox', 'Aqoxy7G00731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.19HT20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1FIS1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N9HW5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R7S1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2YHWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUPK1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GM9EE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU1RQE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LYT3KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW487P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PB41BJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q65VXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBH60A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T19D7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XGMD9S' => 'arhy', 'AT1G12130' => 'ath', 'AT1G12140' => 'ath', 'AT1G12160' => 'ath', 'AT1G12200' => 'ath', 'AT1G62540' => 'ath', 'AT1G62560' => 'ath', 'AT1G62570' => 'ath', 'AT1G62580' => 'ath', 'AT1G62600' => 'ath', 'AT1G62620' => 'ath', 'AT1G63340' => 'ath', 'AT1G63370' => 'ath', 'AT1G63390' => 'ath', 'AT1G65860' => 'ath', 'AT5G07800' => 'ath', 'AT5G61290' => 'ath', 'ATR0111G022' => 'atr', 'ATR0111G036' => 'atr', 'ATR0681G040' => 'atr', 'Atru.chr12.794' => 'acertr', 'Atru.chr9.1368' => 'acertr', 'Atru.chr9.1369' => 'acertr', 'Atru.chr9.1370' => 'acertr', 'Atru.chr9.1371' => 'acertr', 'Atru.chr9.1372' => 'acertr', 'Atru.chr9.1374' => 'acertr', 'Atru.chr9.303' => 'acertr', 'AUR62002280' => 'cqu', 'AUR62002281' => 'cqu', 'AUR62002282' => 'cqu', 'AUR62007483' => 'cqu', 'AUR62008483' => 'cqu', 'AUR62013668' => 'cqu', 'AUR62015414' => 'cqu', 'AUR62015415' => 'cqu', 'AUR62015416' => 'cqu', 'AUR62021610' => 'cqu', 'AUR62039939' => 'cqu', 'BcaB02g06407' => 'bca', 'BcaB03g13204' => 'bca', 'BcaB03g13205' => 'bca', 'BcaB05g21598' => 'bca', 'BcaB07g31336' => 'bca', 'BcaB07g31337' => 'bca', 'BcaB07g31339' => 'bca', 'BcaC02g08926' => 'bca', 'BcaC02g08930' => 'bca', 'BcaC04g22416' => 'bca', 'BcaC04g22418' => 'bca', 'BcaC04g22419' => 'bca', 'BcaC04g22421' => 'bca', 'BcaC04g22422' => 'bca', 'BcaC04g22758' => 'bca', 'BcaC05g25240' => 'bca', 'BcaC06g32507' => 'bca', 'BcaC06g32515' => 'bca', 'BcaC06g33162' => 'bca', 'BcaC06g33163' => 'bca', 'BcaC06g33226' => 'bca', 'BcaC06g33227' => 'bca', 'BcaC07g41723' => 'bca', 'BcaC07g41725' => 'bca', 'BcaC07g41728' => 'bca', 'BcaC07g42558' => 'bca', 'BcaNung05494' => 'bca', 'BcaNung05496' => 'bca', 'BolC2t06292H' => 'bol', 'BolC4t26478H' => 'bol', 'BolC4t26482H' => 'bol', 'BolC4t26486H' => 'bol', 'BolC5t29845H' => 'bol', 'BolC7t45019H' => 'bol', 'BolC7t45020H' => 'bol', 'BolC8t49154H' => 'bol', 'BolC8t52304H' => 'bol', 'BolC8t52306H' => 'bol', 'BolC9t54464H' => 'bol', 'BolC9t54861H' => 'bol', 'BolC9t54862H' => 'bol', 'BolC9t54864H' => 'bol', 'BolC9t59647H' => 'bol', 'BraA02t04932Z' => 'bra', 'BraA03t13811Z' => 'bra', 'BraA03t13812Z' => 'bra', 'BraA06t24121Z' => 'bra', 'BraA08t35217Z' => 'bra', 'BraA09t36960Z' => 'bra', 'BraA09t37252Z' => 'bra', 'BraA09t37255Z' => 'bra', 'BraA09t41751Z' => 'bra', 'BraA09t41753Z' => 'bra', 'BraA10t44918Z' => 'bra', 'C02p03280' => 'bna', 'C04p49000' => 'bna', 'C04p49030' => 'bna', 'C05p11020' => 'bna', 'C07p44960' => 'bna', 'C07p44970' => 'bna', 'C08p15250' => 'bna', 'C08p47630' => 'bna', 'C08p47660' => 'bna', 'C09p15590' => 'bna', 'C09p19560' => 'bna', 'C09p19600' => 'bna', 'C09p69020' => 'bna', 'CAN.G1037.2' => 'can', 'CAN.G186.39' => 'can', 'CAN.G474.12' => 'can', 'CAN.G474.13' => 'can', 'CAN.G474.8' => 'can', 'CAN.G474.9' => 'can', 'CAN.G479.39' => 'can', 'CAN.G560.3' => 'can', 'CANSAT21G2247' => 'cansat', 'CANSAT80G0463' => 'cansat', 'CANSAT80G1052' => 'cansat', 'CANSAT80G1085' => 'cansat', 'CANSAT80G1759' => 'cansat', 'CANSAT80G2881' => 'cansat', 'CARHR012490' => 'chi', 'CARHR012510' => 'chi', 'CARHR049390' => 'chi', 'CARHR057740' => 'chi', 'CARHR205380' => 'chi', 'CARHR275040' => 'chi', 'CARHR275050' => 'chi', 'Carub.0001s1182' => 'cru', 'Carub.0001s1183' => 'cru', 'Carub.0001s1185' => 'cru', 'Carub.0001s1188' => 'cru', 'Carub.0002s0240' => 'cru', 'Carub.0002s0241' => 'cru', 'Carub.0002s0242' => 'cru', 'Carub.0002s0243' => 'cru', 'Carub.0002s0244' => 'cru', 'Carub.0006s0672' => 'cru', 'Carub.0008s2197' => 'cru', 'Ca_06703_v3' => 'car', 'Ca_13641_v3' => 'car', 'Ca_23908_v3' => 'car', 'Ca_23914_v3' => 'car', 'Ca_29888_v3' => 'car', 'CBR_g21995' => 'cbr', 'CBR_g38107' => 'cbr', 'Cc00_g00330' => 'ccan', 'Cc00_g00340' => 'ccan', 'Cc00_g07810' => 'ccan', 'Cc00_g11740' => 'ccan', 'Cc00_g27840' => 'ccan', 'Cc00_g27950' => 'ccan', 'Cc02_g24290' => 'ccan', 'Cc02_g24320' => 'ccan', 'Cc04_g14770' => 'ccan', 'Cc04_g14800' => 'ccan', 'Cc05_g07860' => 'ccan', 'Cc05_g07880' => 'ccan', 'Cc08_g06270' => 'ccan', 'Cc08_g12870' => 'ccan', 'Cc11_g02800' => 'ccan', 'CDE04G2030' => 'cde', 'CDE09G1150' => 'cde', 'CDE11G0141' => 'cde', 'CDE12G0374' => 'cde', 'CDE12G0737' => 'cde', 'Cfa011183' => 'cfa', 'Cfa012767' => 'cfa', 'Cfa012770' => 'cfa', 'Cfa019290' => 'cfa', 'Cfa023650' => 'cfa', 'Cfa026740' => 'cfa', 'Ciclev10019939m.g' => 'ccl', 'Ciclev10020101m.g' => 'ccl', 'Ciclev10020142m.g' => 'ccl', 'CiPaw.11G049100' => 'cil', 'CiPaw.11G151000' => 'cil', 'CiPaw.12G107300' => 'cil', 'CiPaw.12G107400' => 'cil', 'CiPaw.13G033400' => 'cil', 'ClCG04G012010' => 'cla', 'ClCG10G002970' => 'cla', 'COL.COLO4_06167' => 'col', 'COL.COLO4_12505' => 'col', 'COL.COLO4_37203' => 'col', 'COL.COLO4_37204' => 'col', 'COL.COLO4_37205' => 'col', 'Cpa.g.sc13.309' => 'cpa', 'Cpa.g.sc29.133' => 'cpa', 'Cre03.g167150' => 'cre', 'CsaV3_1G005750' => 'csa', 'CsaV3_3G003010' => 'csa', 'CSS0001610' => 'camsi', 'CSS0006692' => 'camsi', 'CSS0010835' => 'camsi', 'CSS0011824' => 'camsi', 'CSS0019250' => 'camsi', 'CSS0021138' => 'camsi', 'CSS0023117' => 'camsi', 'CSS0024980' => 'camsi', 'CSS0027960' => 'camsi', 'CSS0028793' => 'camsi', 'CSS0034328' => 'camsi', 'CSS0040396' => 'camsi', 'DCAR_013365' => 'dca', 'DCAR_025101' => 'dca', 'DCAR_025102' => 'dca', 'DCAR_026023' => 'dca', 'DCAR_026024' => 'dca', 'DCAR_027795' => 'dca', 'DCAR_031509' => 'dca', 'DCAR_031510' => 'dca', 'Dinv10678' => 'din', 'Dinv21607' => 'din', 'Dinv39111' => 'din', 'Dinv43678' => 'din', 'Duzib068G0018' => 'dzi', 'Duzib138G1957' => 'dzi', 'Duzib205G1723' => 'dzi', 'Duzib205G1804' => 'dzi', 'ECA232G1599' => 'eca', 'ECA233G2430' => 'eca', 'ECA233G3234' => 'eca', 'ECA233G5634' => 'eca', 'ECA236G0020' => 'eca', 'EL10Ac3g05582' => 'bvu', 'EL10Ac3g05583' => 'bvu', 'EL10Ac5g11084' => 'bvu', 'EL10Ac5g13017' => 'bvu', 'Eucgr.B00559' => 'egr', 'Eucgr.B00562' => 'egr', 'Eucgr.D02482' => 'egr', 'Eucgr.D02483' => 'egr', 'Eucgr.D02484' => 'egr', 'Eucgr.D02485' => 'egr', 'Eucgr.D02486' => 'egr', 'Eucgr.E00454' => 'egr', 'Eucgr.E00455' => 'egr', 'Eucgr.E00456' => 'egr', 'FAN04G0233' => 'fan', 'FAN08G0816' => 'fan', 'FAN08G2143' => 'fan', 'FAN08G2898' => 'fan', 'FAN13G0098' => 'fan', 'FAN13G0181' => 'fan', 'FAN13G1543' => 'fan', 'FAN15G2046' => 'fan', 'FAN15G3401' => 'fan', 'FAN18G1340' => 'fan', 'FAN18G1498' => 'fan', 'FAN18G3629' => 'fan', 'FAN18G3679' => 'fan', 'FAN20G2209' => 'fan', 'FAN24G0797' => 'fan', 'FAN24G1021' => 'fan', 'FAN27G1583' => 'fan', 'FvH4_2g15410' => 'fve', 'FvH4_5g00210' => 'fve', 'FvH4_5g00220' => 'fve', 'FvH4_5g00230' => 'fve', 'FvH4_5g14390' => 'fve', 'FvH4_5g36500' => 'fve', 'FvH4_5g36530' => 'fve', 'FvH4_5g36860' => 'fve', 'Glyma.04G165000' => 'gma', 'Glyma.05G023601' => 'gma', 'Glyma.05G023700' => 'gma', 'Glyma.05G023800' => 'gma', 'Glyma.06G198100' => 'gma', 'Glyma.11G031100' => 'gma', 'Glyma.11G153100' => 'gma', 'Glyma.13G200400' => 'gma', 'Gohir.A03G009500' => 'ghi', 'Gohir.A11G079100' => 'ghi', 'Gohir.A11G079200' => 'ghi', 'Gohir.A12G180200' => 'ghi', 'Gohir.D03G161300' => 'ghi', 'Gohir.D11G083800' => 'ghi', 'Gohir.D11G083900' => 'ghi', 'Gohir.D12G182900' => 'ghi', 'Gorai.003G170000' => 'gra', 'Gorai.007G089300' => 'gra', 'Gorai.007G089500' => 'gra', 'Gorai.008G196200' => 'gra', 'GSVIVG01000288001' => 'vvi', 'GSVIVG01000825001' => 'vvi', 'GSVIVG01001280001' => 'vvi', 'GSVIVG01001281001' => 'vvi', 'GSVIVG01001282001' => 'vvi', 'GSVIVG01001284001' => 'vvi', 'GSVIVG01004784001' => 'vvi', 'GSVIVG01004785001' => 'vvi', 'GSVIVG01004787001' => 'vvi', 'GSVIVG01004788001' => 'vvi', 'GSVIVG01007933001' => 'vvi', 'GSVIVG01007934001' => 'vvi', 'GSVIVG01034830001' => 'vvi', 'HanXRQChr04g0122801' => 'han', 'HanXRQChr04g0122811' => 'han', 'HanXRQChr04g0122861' => 'han', 'HanXRQChr04g0122871' => 'han', 'HanXRQChr06g0169591' => 'han', 'HanXRQChr09g0270921' => 'han', 'HanXRQChr10g0316971' => 'han', 'HanXRQChr13g0394941' => 'han', 'HanXRQChr17g0553571' => 'han', 'HanXRQChr17g0553591' => 'han', 'HanXRQChr17g0553601' => 'han', 'HanXRQChr17g0564411' => 'han', 'Haze_02667' => 'cav', 'Haze_07671' => 'cav', 'Haze_07863' => 'cav', 'Haze_07865' => 'cav', 'Hma1.2p1_0060F.1_g033390' => 'hma', 'Hma1.2p1_0590F.1_g185000' => 'hma', 'Hma1.2p1_1720F.1_g299290' => 'hma', 'HPP92_007415' => 'vpl', 'HPP92_015032' => 'vpl', 'HPP92_015111' => 'vpl', 'HPP92_017526' => 'vpl', 'Hund09325' => 'sun', 'Hund11583' => 'sun', 'Hund17044' => 'sun', 'Lalb_Chr05g0214531' => 'lal', 'Lalb_Chr16g0379701' => 'lal', 'Lj1g0015793' => 'lja', 'Lj2g0017589' => 'lja', 'Lj3g0009827' => 'lja', 'Lj3g0011481' => 'lja', 'Lj4g0013611' => 'lja', 'Lj5A106T72' => 'lonja', 'Lj5C106G17' => 'lonja', 'Lj7A534G37' => 'lonja', 'Lj7A534G38' => 'lonja', 'Lj7C534G6' => 'lonja', 'Lj8C258T4' => 'lonja', 'Lsat_1_v5_gn_1_90700' => 'lsa', 'Lsat_1_v5_gn_4_109881' => 'lsa', 'Lsat_1_v5_gn_6_1841' => 'lsa', 'Lsat_1_v5_gn_7_8940' => 'lsa', 'Lsat_1_v5_gn_7_9101' => 'lsa', 'Lsat_1_v5_gn_7_9121' => 'lsa', 'Lsat_1_v5_gn_8_132001' => 'lsa', 'Lsat_1_v5_gn_8_132021' => 'lsa', 'Manes.01G077000' => 'mes', 'Manes.01G077100' => 'mes', 'Manes.02G036300' => 'mes', 'Manes.02G036400' => 'mes', 'Manes.06G088200' => 'mes', 'Manes.14G082900' => 'mes', 'Mapoly0002s0275' => 'mpo', 'Mapoly0020s0006' => 'mpo', 'MBI04_g37590_MAGBIO' => 'mbi', 'MBI08_g39085_MAGBIO' => 'mbi', 'MBI09_g39860_MAGBIO' => 'mbi', 'MBI11_g04232_MAGBIO' => 'mbi', 'MBI14_g31917_MAGBIO' => 'mbi', 'MBI14_g33219_MAGBIO' => 'mbi', 'MBI14_g43732_MAGBIO' => 'mbi', 'MBI15_g03501_MAGBIO' => 'mbi', 'MBI19_g36356_MAGBIO' => 'mbi', 'MCO02G112' => 'mco', 'MCO16G323' => 'mco', 'MD06G1063000' => 'mdo', 'MD06G1063100' => 'mdo', 'MD06G1199100' => 'mdo', 'MD14G1206500' => 'mdo', 'MD14G1206800' => 'mdo', 'MD14G1207200' => 'mdo', 'Medtr3g437580' => 'mtr', 'Medtr5g012130' => 'mtr', 'Medtr8g037880' => 'mtr', 'Medtr8g037910' => 'mtr', 'MELO3C002007.2' => 'cme', 'MELO3C013964.2' => 'cme', 'MELO3C013965.2' => 'cme', 'MELO3C013966.2' => 'cme', 'MELO3C013967.2' => 'cme', 'Migut.A00811' => 'egut', 'Migut.I00252' => 'egut', 'Migut.N01616' => 'egut', 'Migut.N01617' => 'egut', 'Migut.O00698' => 'egut', 'MSTRG.11361' => 'ama', 'MSTRG.11362' => 'ama', 'MSTRG.12078' => 'ama', 'MSTRG.22989' => 'ama', 'MSTRG.25536' => 'ama', 'MSTRG.4905' => 'ama', 'MSTRG.4907' => 'ama', 'Nitab4.5_0001211g0010' => 'nta', 'Nitab4.5_0001292g0020' => 'nta', 'Nitab4.5_0001329g0070' => 'nta', 'Nitab4.5_0003531g0030' => 'nta', 'Nitab4.5_0003881g0050' => 'nta', 'Nitab4.5_0005050g0010' => 'nta', 'Nitab4.5_0014042g0010' => 'nta', 'Nn1g01063' => 'nnu', 'Nn3g17374' => 'nnu', 'Nn4g23338' => 'nnu', 'Nn6g34028' => 'nnu', 'Oeu011908.1' => 'oeu', 'Oeu045804.1' => 'oeu', 'Oeu047263.1' => 'oeu', 'Oeu051927.1' => 'oeu', 'Oeu052469.1' => 'oeu', 'Oeu055513.1' => 'oeu', 'Os01g0368000' => 'osa', 'Os02g0580600' => 'osa', 'Os06g0528700' => 'osa', 'Os07g0111700' => 'osa', 'Os07g0111900' => 'osa', 'Os07g0112000' => 'osa', 'Os07g0112100' => 'osa', 'Os10g0553800' => 'osa', 'Os10g0554300' => 'osa', 'Peaxi162Scf00106g00614' => 'pax', 'Peaxi162Scf00106g00620' => 'pax', 'Peaxi162Scf00274g00023' => 'pax', 'Peaxi162Scf00319g00113' => 'pax', 'Peaxi162Scf00959g00014' => 'pax', 'Peaxi162Scf00959g00015' => 'pax', 'Peaxi162Scf01052g00002' => 'pax', 'PGR042G0436' => 'pgr', 'PGR042G1094' => 'pgr', 'PGR089G0005' => 'pgr', 'PGSC0003DMG400013808' => 'stu', 'PGSC0003DMG400016785' => 'stu', 'PGSC0003DMG400024556' => 'stu', 'Phvul.002G061500' => 'pvu', 'Phvul.003G187000' => 'pvu', 'Phvul.003G187066' => 'pvu', 'Phvul.005G030400' => 'pvu', 'Phvul.009G190698' => 'pvu', 'Phvul.L001665' => 'pvu', 'Potri.001G121000' => 'ptr', 'Potri.001G121100' => 'ptr', 'Potri.012G067500' => 'ptr', 'Potri.013G019900' => 'ptr', 'Pp3c11_14620' => 'ppa', 'PRCOL_00003591' => 'pco', 'Prupe.5G074800' => 'ppe', 'Prupe.5G074900' => 'ppe', 'Prupe.5G199900' => 'ppe', 'Prupe.8G005000' => 'ppe', 'Psat2g178560' => 'psa', 'Psat4g148040' => 'psa', 'Psat5g181040' => 'psa', 'PSO170G4989' => 'pso', 'PSO339G5077' => 'pso', 'PSO478G4156' => 'pso', 'PSO528G0169' => 'pso', 'PSO541G0347' => 'pso', 'PSO541G0937' => 'pso', 'PSO541G4284' => 'pso', 'PSO541G6332' => 'pso', 'PSO675G7219' => 'pso', 'PSO801G0507' => 'pso', 'QL04p039198' => 'qlo', 'QL04p039232' => 'qlo', 'QL04p039242' => 'qlo', 'QL10p018548' => 'qlo', 'QL12p013206' => 'qlo', 'QL12p013217' => 'qlo', 'QL12p013241' => 'qlo', 'QL12p013262' => 'qlo', 'QL12p013284' => 'qlo', 'QL12p013289' => 'qlo', 'QL12p013300' => 'qlo', 'QL12p013336' => 'qlo', 'QL12p013355' => 'qlo', 'RcHm_v2.0_Chr7g0182301' => 'rch', 'RcHm_v2.0_Chr7g0202451' => 'rch', 'RcHm_v2.0_Chr7g0202461' => 'rch', 'RcHm_v2.0_Chr7g0202471' => 'rch', 'RcHm_v2.0_Chr7g0202481' => 'rch', 'RcHm_v2.0_Chr7g0202561' => 'rch', 'RcHm_v2.0_Chr7g0202571' => 'rch', 'RcHm_v2.0_Chr7g0202581' => 'rch', 'RcHm_v2.0_Chr7g0202631' => 'rch', 'Rhsim07G0030500' => 'rsi', 'Rhsim07G0105400' => 'rsi', 'Rhsim12G0153100' => 'rsi', 'Rhsim12G0153200' => 'rsi', 'Sabra01G0093300' => 'sbr', 'Sabra03G0077800' => 'sbr', 'Sabra12G0047800' => 'sbr', 'SalBow5G0818' => 'sbo', 'SalBow6G0882' => 'sbo', 'SalBow6G2921' => 'sbo', 'Sc02g0002760' => 'sci', 'Sc04g0002970' => 'sci', 'Sc22g0000730' => 'sci', 'Sed0004318' => 'sed', 'Sed0013631' => 'sed', 'Sed0025079' => 'sed', 'SEGI_02798' => 'sgi', 'SEGI_08282' => 'sgi', 'SEGI_14733' => 'sgi', 'SEGI_23956' => 'sgi', 'SEGI_26157' => 'sgi', 'SEGI_29782' => 'sgi', 'SEGI_30662' => 'sgi', 'SEGI_31100' => 'sgi', 'SEGI_38377' => 'sgi', 'SGA_v2.0_scaffold117G32316' => 'sas', 'SGA_v2.0_scaffold11G05542' => 'sas', 'SGA_v2.0_scaffold120G32855' => 'sas', 'SGA_v2.0_scaffold12G06182' => 'sas', 'SGA_v2.0_scaffold136G34976' => 'sas', 'SGA_v2.0_scaffold24G10414' => 'sas', 'SGA_v2.0_scaffold2G01021' => 'sas', 'SGA_v2.0_scaffold313G48315' => 'sas', 'SHI03179' => 'shi', 'SMO139G0146' => 'smo', 'SMO145G0079' => 'smo', 'SMO145G0215' => 'smo', 'Solyc03g115560.3' => 'sly', 'Solyc05g050910.3' => 'sly', 'Solyc05g050920.3' => 'sly', 'Solyc06g060610.2' => 'sly', 'Solyc06g062310.3' => 'sly', 'Solyc06g062320.3' => 'sly', 'Sopen03g034550' => 'spe', 'Sopen05g029390' => 'spe', 'Sopen06g020740' => 'spe', 'Sopen06g021540' => 'spe', 'Sopen06g021550' => 'spe', 'Sp1g10810' => 'spa', 'Sp1g10830' => 'spa', 'Sp2g02010' => 'spa', 'Sp2g02030' => 'spa', 'Sp2g02040' => 'spa', 'Sp2g02050' => 'spa', 'Sp2g24520' => 'spa', 'Sp6g35130' => 'spa', 'TAR622G0950' => 'tar', 'TAR629G2688' => 'tar', 'TAR636G0348' => 'tar', 'TAR636G0543' => 'tar', 'TAR636G0758' => 'tar', 'THA.LOC104801397' => 'tha', 'THA.LOC104809461' => 'tha', 'THA.LOC104818517' => 'tha', 'Thecc.01G381300' => 'tca', 'Thecc.03G095900' => 'tca', 'Thecc.03G256100' => 'tca', 'Thecc.03G256200' => 'tca', 'Thhalv10000434m.g' => 'esa', 'Thhalv10000726m.g' => 'esa', 'Thhalv10004168m.g' => 'esa', 'Thhalv10007545m.g' => 'esa', 'Thhalv10007557m.g' => 'esa', 'Thhalv10007582m.g' => 'esa', 'Thhalv10009776m.g' => 'esa', 'Thhalv10013475m.g' => 'esa', 'Thhalv10023249m.g' => 'esa', 'Thhalv10023450m.g' => 'esa', 'Thhalv10023453m.g' => 'esa', 'Thhalv10023900m.g' => 'esa', 'Thhalv10024032m.g' => 'esa', 'TPR.G11718' => 'tpr', 'TPR.G12245' => 'tpr', 'TPR.G19119' => 'tpr', 'TPR.G25917' => 'tpr', 'TPR.G31536' => 'tpr', 'TPR.G36597' => 'tpr', 'TWI81G0245' => 'twi', 'TWI81G0425' => 'twi', 'TWI81G1015' => 'twi', 'unitig_22.g6243' => 'ugi', 'vmacro13433' => 'vma', 'vmacro13434' => 'vma', 'vmacro13435' => 'vma', 'vmacro13436' => 'vma', 'vmacro14099' => 'vma', 'vmacro14100' => 'vma', 'vmacro14101' => 'vma', 'vmacro16518' => 'vma', 'vmacro16519' => 'vma', 'VMungo0513G0001' => 'vmu', 'VMungo0778G0001' => 'vmu', 'VMungo1080G0697' => 'vmu', 'VMungo1215G0210' => 'vmu', 'VMungo1309G2483' => 'vmu', 'Zm00001eb000400' => 'zma', 'Zm00001eb023110' => 'zma', 'Zm00001eb023540' => 'zma', 'Zm00001eb023590' => 'zma', 'Zm00001eb298520' => 'zma', 'Zm00001eb298540' => 'zma', 'Zm00001eb298550' => 'zma', 'Zm00001eb298560' => 'zma' ) $gf_id = 'HOM05D000908' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000908' ) $data_identifier = 'HOM05D000908' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 12, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 16, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 28, 'bol' => (int) 15, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 11, 'car' => (int) 5, 'cbr' => (int) 2, 'ccan' => (int) 15, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 2, 'col' => (int) 5, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 2, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 4, 'dzi' => (int) 4, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 13, 'han' => (int) 12, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 2, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 2, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 7, 'nta' => (int) 7, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 3, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 4, 'ppa' => (int) 1, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 10, 'qlo' => (int) 13, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 3, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 13, 'tpr' => (int) 6, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb298560' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1